SNP Profiles of IMC 14   View Data

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 Key

 1234567891011121314
_Input profile
CTCCTTCCGGTTAAACCCAGGGAGTTAC
1._RUQ_1634
_______AC___AG__
2._IMC_14
_______AC___AG__
3._IMC_14
_______AC___AG__
4._IMC_14
_______AC___AG__
5._IMC_14
_______AC___AG__
6._IMC_14
_______AC___AG__
7._IMC_14
_______AC___AG__
8._IMC_14
_______AC___AG__
9._IMC_14
_______AC___AG__
10._IMC_14
_______AC___AG__
11._IMC_14
_______AC___AG__
12._IMC_14
_______AC___AG__
13._IMC_14
_______AC___AG__
14._IMC_14
_______AC___AG__
15._IMC_14
_______AC___AG__
16._GC-03-030-3-09
_______AC___AG__
17._GC-04-054-3-18
_______AC___AG__
18._GC-03-030-3-09
_______AC___AG__
19._GC-03-030-3-09
_______AC___AG__
20._GC-03-030-3-09
_______AC___AG__
21._GC-03-030-3-09
_______AC___AG__
22._GC-03-030-3-09
_______AC___AG__
23._GC-03-030-3-09
_______AC___AG__
24._GC-03-030-3-09
_______AC___AG__
25._GC-03-030-3-09
_______AC___AG__
26._GC-03-030-3-09
_______AC___AG__
27._GC-03-030-3-09
_______AC___AG__
28._GC-03-030-3-09
_______AC___AG__
29._GC-03-30-3-9
_______AC___AG__
30._RUQ_1634
_______AC___AG__
31._RUQ_1634
_______CC___AA__
 1516171819202122232425262728
_Input profile
AGACCCAACCCCAAGGATAACCCTAGCC
1._RUQ_1634
AG____CC_GG_AACC___
2._IMC_14
_____CC_GG_AA____
3._IMC_14
_____CC_GG_AA____
4._IMC_14
_____CC_GG_AA____
5._IMC_14
_____CC_GG_AA____
6._IMC_14
_____CC_GG_AA____
7._IMC_14
_____CC_GG_AA____
8._IMC_14
_____CC_GG_AA____
9._IMC_14
_____CC_GG_AA____
10._IMC_14
_____CC_GG_AA____
11._IMC_14
_____CC_GG_AA____
12._IMC_14
_____CC_GG_AA____
13._IMC_14
_____CC_GG_AA____
14._IMC_14
_____CC_GG_AA____
15._IMC_14
_____CC_GG_AA____
16._GC-03-030-3-09
AG____CC_GG_AACC___
17._GC-04-054-3-18
AG____CC_GG_AACC___
18._GC-03-030-3-09
AG____CC_GG_AACC___
19._GC-03-030-3-09
AG____CC_GG_AACC___
20._GC-03-030-3-09
AG____CC_GG_AACC___
21._GC-03-030-3-09
AG____CC_GG_AACC___
22._GC-03-030-3-09
AG____CC_GG_AACC___
23._GC-03-030-3-09
AG____CC_GG_AACC___
24._GC-03-030-3-09
AG____CC_GG_AACC___
25._GC-03-030-3-09
AG____CC_GG_AACC___
26._GC-03-030-3-09
AG____CC_GG_AACC___
27._GC-03-030-3-09
AG____CC_GG_AACC___
28._GC-03-030-3-09
AG____CC_GG_AACC___
29._GC-03-30-3-9
AG____CC_GG_AAGG___
30._RUQ_1634
AG____CC_GG_AAGG___
31._RUQ_1634
_____CC_CC_CC____
 2930313233343536373839404142
_Input profile
AACGTTGGGGCTTTACAATTCCGGCGAA
1._RUQ_1634
__TTGGGG__AC__CC-_AA
2._IMC_14
AA__GG______CC__AA
3._IMC_14
AA__GG______CC__AA
4._IMC_14
AA__GG______CC__AA
5._IMC_14
AA__GG______CC__AA
6._IMC_14
AA__GG______CC__AA
7._IMC_14
___GG______CC__AA
8._IMC_14
AA__GG______CC__AA
9._IMC_14
AA__GG______CC__AA
10._IMC_14
___GG______CC__AA
11._IMC_14
AA__GG______CC__AA
12._IMC_14
___GG______CC__AA
13._IMC_14
___GG______CC__AA
14._IMC_14
___GG______CC__AA
15._IMC_14
___GG______CC__AA
16._GC-03-030-3-09
__CCGGGG_____CCGG_AA
17._GC-04-054-3-18
AA_CCGGGG__AC_CGCCGG_AA
18._GC-03-030-3-09
AA_CCGGGG__AC_CGCCGG_AA
19._GC-03-030-3-09
AA_CCGGGG__AC_CGCCGG_AA
20._GC-03-030-3-09
AA_CCGGGG__AC_CGCCGG_AA
21._GC-03-030-3-09
AA_CCGGGG__AC_CGCCGG_AA
22._GC-03-030-3-09
AA_CCGGGG__AC_CGCCGG_AA
23._GC-03-030-3-09
AA_CCGGGG__AC_CGCCGG_AA
24._GC-03-030-3-09
__CCGGGG____CGCCGG_AA
25._GC-03-030-3-09
__CCGGGG____CGCCGG_AA
26._GC-03-030-3-09
__CCGGGG____CGCCGG_AA
27._GC-03-030-3-09
__CCGGGG____CGCCGG_AA
28._GC-03-030-3-09
__CCGGGG____CGCCGG_AA
29._GC-03-30-3-9
___CCGG__AC_CGGGGG_AA
30._RUQ_1634
___CCGG__AC_CGGGGG_AA
31._RUQ_1634
AG__GG______GG__AG
 4344454647484950515253545556
_Input profile
CCCCAACCGGCTCCGGAAGTGGATAGGG
1._RUQ_1634
CC________GT____
2._IMC_14
____GG_CC__GT____
3._IMC_14
____GG_CC__GT____
4._IMC_14
____GG_CC__GT____
5._IMC_14
____GG_CC__GT____
6._IMC_14
____GG_CC__GT____
7._IMC_14
____GG_CC__GT____
8._IMC_14
____GG_CC_______
9._IMC_14
____GG_CC_______
10._IMC_14
____GG_CC__GT____
11._IMC_14
____GG____GT____
12._IMC_14
____GG_CC_______
13._IMC_14
____GG_CC_______
14._IMC_14
____GG_CC_______
15._IMC_14
____GG_CC_______
16._GC-03-030-3-09
CC___GG_CC_______
17._GC-04-054-3-18
CC___GG_CC__GT____
18._GC-03-030-3-09
CC___GG_CC__GT____
19._GC-03-030-3-09
CC___GG_CC__GT____
20._GC-03-030-3-09
CC___GG_CC__GT____
21._GC-03-030-3-09
CC___GG_CC__GT____
22._GC-03-030-3-09
CC___GG_CC_______
23._GC-03-030-3-09
CC___GG_CC_______
24._GC-03-030-3-09
CC___GG_CC__GT____
25._GC-03-030-3-09
CC___GG_CC__GT____
26._GC-03-030-3-09
CC___GG_CC_______
27._GC-03-030-3-09
CC___GG_CC_______
28._GC-03-030-3-09
CC___GG_CC_______
29._GC-03-30-3-9
____GG____AA____
30._RUQ_1634
____GG____AA____
31._RUQ_1634
____AA_CT__TT____
 575859           
_Input profile
CGTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1634
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._IMC_14
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-04-054-3-18
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-03-030-3-09
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-03-30-3-9
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._RUQ_1634
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._RUQ_1634
___X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_14 RUQ_1634

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._IMC_14 RUQ_1634

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_14

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._IMC_14

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

4._IMC_14

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

5._IMC_14

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

6._IMC_14

identical
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

7._IMC_14

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

8._IMC_14

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

9._IMC_14

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

10._IMC_14

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

11._IMC_14

identical
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

12._IMC_14

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

13._IMC_14

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

14._IMC_14

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

15._IMC_14

identical
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

16._IMC_14 GC-03-030-3-09

94.1 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

17._IMC_14 GC-04-054-3-18

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

18._IMC_14 GC-03-030-3-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

19._IMC_14 GC-03-030-3-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._IMC_14 GC-03-030-3-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._IMC_14 GC-03-030-3-09

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

22._IMC_14 GC-03-030-3-09

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

23._IMC_14 GC-03-030-3-09

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

24._IMC_14 GC-03-030-3-09

89.5 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

25._IMC_14 GC-03-030-3-09

89.5 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._IMC_14 GC-03-030-3-09

88.9 %
18 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

27._IMC_14 GC-03-030-3-09

88.9 %
18 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._IMC_14 GC-03-030-3-09

88.9 %
18 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

29._IMC_14 GC-03-30-3-9

70.6 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

30._IMC_14 RUQ_1634

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

31._IMC_14 RUQ_1634

41.7 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527